AxonDeepSeg
Contents:
Introduction
Installation
Miniconda
Linux
macOS
Windows
git
Install AxonDeepSeg
Testing the installation
Quick test
Comprehensive test
Graphical User Interface (GUI) (optional)
Known issues
GPU-compatible installation
Linux and Windows 10
Existing models
Using AxonDeepSeg
Activate the virtual environment
Example dataset
Segmentation
Syntax
Segment a single image
Segment multiple images of the same resolution
Segment images from multiple folders
Morphometrics
Syntax
Morphometrics of a single image
Morphometrics of a specific image from multiple folders
Morphometrics of all the images present in folder(s)
Axon Shape: Circle vs Ellipse
Circle
Ellipse
Morphometrics file
Jupyter notebooks
Guide for manual labelling
Manual masks for training your own model
Manual correction of segmentation masks
Help
Citation
Changelog
Version 3.2.0 - 2020-10-16
Version [3.0] - 2020-03-13
Version [2.1] - 2018-09-25
Version [2.0] - 2018-09-11
Version [1.1] - 2018-08-02
Version [1.0] - 2018-08-02
Version [0.6] - 2018-08-01
Version [0.4.1] - 2018-05-16
Version [0.3] - 2018-02-22
Licensing
Contributors
AxonDeepSeg
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