AxonDeepSeg
Contents:
Introduction
Installation
Miniconda
Linux
macOS
Windows
git
Install AxonDeepSeg
Testing the installation
Quick test
Comprehensive test
Graphical User Interface (GUI) (optional)
Known issues
GPU-compatible installation
Existing models
Using AxonDeepSeg
Activate the virtual environment
Example dataset
Segmentation
Syntax
Segment a single image
Segment multiple images of the same resolution
Segment images from multiple folders
Morphometrics
Syntax
Morphometrics of a single image
Morphometrics of images from multiple folders
Jupyter notebooks
Guide for manual labelling
Manual masks for training your own model
Manual correction of segmentation masks
Help
Citation
Changelog
Version 3.2.0 - 2020-10-16
Version [3.0] - 2020-03-13
Version [2.1] - 2018-09-25
Version [2.0] - 2018-09-11
Version [1.1] - 2018-08-02
Version [1.0] - 2018-08-02
Version [0.6] - 2018-08-01
Version [0.4.1] - 2018-05-16
Version [0.3] - 2018-02-22
Licensing
Contributors
AxonDeepSeg
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v1.0
v0.6
v0.5
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