AxonDeepSeg
Contents:
Introduction
Installation
Miniconda
Linux
macOS
Windows
git
Install AxonDeepSeg
Testing the installation
Quick test
Comprehensive test
Graphical User Interface (GUI)
Existing models
Using AxonDeepSeg
Activate the virtual environment
Example dataset
Segmentation
Syntax
Segment a single image
Segment multiple images of the same resolution
Segment images from multiple folders
Segment images using a zoom factor
Segment an image using a range of zoom factors
Morphometrics
Syntax
Morphometrics of a single image
Morphometrics of a specific image from multiple folders
Morphometrics of all the images present in folder(s)
Axon Shape: Circle vs Ellipse
Circle
Ellipse
Morphometrics file
Colorization
Jupyter notebooks
Manual correction of segmentation masks
Napari plugin
Open image and mask
Modify the mask
Modify the mask
GIMP software
Training Models
Help
Citation
Changelog
v4.1.0 (2022-10-07)
Version 4.0.0 - 2022-02-03
Version 3.3.0 - 2022-01-14
Version 3.2.0 - 2020-10-16
Version [3.0] - 2020-03-13
Version [2.1] - 2018-09-25
Version [2.0] - 2018-09-11
Version [1.1] - 2018-08-02
Version [1.0] - 2018-08-02
Version [0.6] - 2018-08-01
Version [0.4.1] - 2018-05-16
Version [0.3] - 2018-02-22
Licensing
Contributors
AxonDeepSeg
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