AxonDeepSeg
Contents:
Introduction
Installation
Miniconda
Linux
macOS
Windows
git
Install AxonDeepSeg
Testing the installation
Quick test
Comprehensive test
Graphical User Interface (GUI)
Known issues
GPU Support
Existing models
Using AxonDeepSeg
Activate the virtual environment
Example dataset
Segmentation
Syntax
Segment a single image
Segment multiple images of the same resolution
Segment images from multiple folders
Morphometrics
Syntax
Morphometrics of a single image
Morphometrics of a specific image from multiple folders
Morphometrics of all the images present in folder(s)
Axon Shape: Circle vs Ellipse
Circle
Ellipse
Morphometrics file
Jupyter notebooks
Manual correction of segmentation masks
Training Models
Help
Citation
Changelog
Version 4.0.0 - 2022-02-03
Version 3.3.0 - 2022-01-14
Version 3.2.0 - 2020-10-16
Version [3.0] - 2020-03-13
Version [2.1] - 2018-09-25
Version [2.0] - 2018-09-11
Version [1.1] - 2018-08-02
Version [1.0] - 2018-08-02
Version [0.6] - 2018-08-01
Version [0.4.1] - 2018-05-16
Version [0.3] - 2018-02-22
Licensing
Contributors
AxonDeepSeg
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Index
Edit on GitHub
Index